HL_8RDV_100

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_100 not in the Motif Atlas

Geometric match to HL_4V88_222

Geometric discrepancy: 0.1566

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8RDV|1|iN|G|1560
8RDV|1|iN|G|1561
8RDV|1|iN|G|1562
8RDV|1|iN|A|1563
8RDV|1|iN|A|1564
8RDV|1|iN|C|1565

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Z2

Large subunit ribosomal RNA; LSU rRNA