HL_8RDV_104

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUCGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_104 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.1451

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8RDV|1|Z2|G|2287
8RDV|1|Z2|U|2288
8RDV|1|Z2|C|2289
8RDV|1|Z2|G|2290
8RDV|1|Z2|G|2291
8RDV|1|Z2|A|2292
8RDV|1|Z2|A|2293
8RDV|1|Z2|A|2294
8RDV|1|Z2|U|2295

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain F7

Large ribosomal subunit protein uL5