HL_8RDW_013

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

ACACGAGAAAU

Length

11 nucleotides

Bulged bases

8RDW|1|Z2|G|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_013 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1159

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8RDW|1|Z2|A|365
8RDW|1|Z2|C|366
8RDW|1|Z2|A|367
8RDW|1|Z2|C|368
8RDW|1|Z2|G|369
8RDW|1|Z2|A|370
8RDW|1|Z2|G|371
8RDW|1|Z2|A|372
8RDW|1|Z2|A|373
8RDW|1|Z2|A|374
8RDW|1|Z2|U|375

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain WD

Large ribosomal subunit protein bL28