HL_8RDW_085

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

8RDW|1|iN|U|837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_085 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.0914

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8RDW|1|iN|G|830
8RDW|1|iN|A|831
8RDW|1|iN|U|832
8RDW|1|iN|U|833
8RDW|1|iN|A|834
8RDW|1|iN|G|835
8RDW|1|iN|A|836
8RDW|1|iN|U|837
8RDW|1|iN|A|838
8RDW|1|iN|C|839
8RDW|1|iN|C|840

Current chains

Chain iN

16S rRNA

Nearby chains

Chain KU

Small ribosomal subunit protein uS11

Chain Z2

Large subunit ribosomal RNA; LSU rRNA