HL_8RJB_050
3D structure
- PDB id
- 8RJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69243 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8RJB|1|K|A|3642, 8RJB|1|K|A|3643, 8RJB|1|K|U|3644, 8RJB|1|K|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJB_050 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.1563
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8RJB|1|K|U|3639
8RJB|1|K|U|3640
8RJB|1|K|U|3641
8RJB|1|K|A|3642
8RJB|1|K|A|3643
8RJB|1|K|U|3644
8RJB|1|K|U|3645
8RJB|1|K|A|3646
8RJB|1|K|A|3647
8RJB|1|K|A|3648
8RJB|1|K|A|3649
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain B
- Nascent chain
- Chain j
- Ribosomal protein L37
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