HL_8RJB_053

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8RJB|1|K|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJB_053 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1247

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8RJB|1|K|G|3757
8RJB|1|K|U|3758
8RJB|1|K|A|3759
8RJB|1|K|A|3760
8RJB|1|K|C|3761
8RJB|1|K|U|3762
8RJB|1|K|A|3763
8RJB|1|K|U|3764
8RJB|1|K|G|3765
8RJB|1|K|A|3766
8RJB|1|K|C|3767

Current chains

Chain K

28S rRNA

Nearby chains

Chain q

Transfer RNA; tRNA