HL_8RJC_004

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8RJC|1|K|G|134, 8RJC|1|K|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.5836

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8RJC|1|K|C|131
8RJC|1|K|G|132
8RJC|1|K|C|133
8RJC|1|K|G|134
8RJC|1|K|G|135
8RJC|1|K|C|136
8RJC|1|K|G|137

Current chains

Chain K

28S rRNA

Nearby chains

Chain N

Ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain j

Ribosomal protein L37

Chain v

5.8S ribosomal RNA; 5.8S rRNA