3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
CUUGGGAAUG
Length
10 nucleotides
Bulged bases
8RJC|1|K|G|294, 8RJC|1|K|A|295, 8RJC|1|K|A|296
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8RJC_008 not in the Motif Atlas
Homologous match to HL_8C3A_008
Geometric discrepancy: 0.115
The information below is about HL_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

8RJC|1|K|C|289
8RJC|1|K|U|290
8RJC|1|K|U|291
8RJC|1|K|G|292
8RJC|1|K|G|293
8RJC|1|K|G|294
8RJC|1|K|A|295
8RJC|1|K|A|296
8RJC|1|K|U|297
8RJC|1|K|G|298

Current chains

Chain K
28S rRNA

Nearby chains

Chain L
60S ribosomal protein L13
Chain N
Ribosomal protein L15
Chain a
60S ribosomal protein L27a
Chain o
60S ribosomal protein L36a-like

Coloring options:


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