HL_8RJC_016
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 8RJC|1|K|C|1325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJC_016 not in the Motif Atlas
- Homologous match to HL_5TBW_014
- Geometric discrepancy: 0.075
- The information below is about HL_5TBW_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8RJC|1|K|U|1317
8RJC|1|K|C|1318
8RJC|1|K|U|1319
8RJC|1|K|U|1320
8RJC|1|K|G|1321
8RJC|1|K|A|1322
8RJC|1|K|A|1323
8RJC|1|K|A|1324
8RJC|1|K|C|1325
8RJC|1|K|A|1326
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain a
- 60S ribosomal protein L27a
- Chain e
- Ribosomal protein L32
- Chain w
- Ribosomal protein L3
Coloring options: