HL_8RJC_025

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8RJC|1|K|C|1676, 8RJC|1|K|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_025 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1395

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8RJC|1|K|C|1675
8RJC|1|K|C|1676
8RJC|1|K|U|1677
8RJC|1|K|C|1678
8RJC|1|K|A|1679
8RJC|1|K|G|1680

Current chains

Chain K

28S rRNA

Nearby chains

Chain a

60S ribosomal protein L27a

Chain b

60S ribosomal protein L29

Chain o

60S ribosomal protein L36a-like