HL_8RJC_037

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

8RJC|1|K|C|2488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_037 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.1535

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8RJC|1|K|G|2487
8RJC|1|K|C|2488
8RJC|1|K|C|2489
8RJC|1|K|U|2490
8RJC|1|K|C|2491

Current chains

Chain K

28S rRNA

Nearby chains

Chain v

5.8S ribosomal RNA; 5.8S rRNA