3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
GUUCGCC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8RJC_042 not in the Motif Atlas
Homologous match to HL_8C3A_038
Geometric discrepancy: 0.5304
The information below is about HL_8C3A_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75033.1
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
3

Unit IDs

8RJC|1|K|G|2664
8RJC|1|K|U|2665
8RJC|1|K|U|2666
8RJC|1|K|C|2667
8RJC|1|K|G|2668
8RJC|1|K|C|2669
8RJC|1|K|C|2670

Current chains

Chain K
28S rRNA

Nearby chains

Chain R
Ribosomal protein L19
Chain p
60S ribosomal protein L37a

Coloring options:


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