HL_8RJC_042
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GUUCGCC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJC_042 not in the Motif Atlas
- Homologous match to HL_8C3A_038
- Geometric discrepancy: 0.5304
- The information below is about HL_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75033.1
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8RJC|1|K|G|2664
8RJC|1|K|U|2665
8RJC|1|K|U|2666
8RJC|1|K|C|2667
8RJC|1|K|G|2668
8RJC|1|K|C|2669
8RJC|1|K|C|2670
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain p
- 60S ribosomal protein L37a
Coloring options: