HL_8RJC_046

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8RJC|1|K|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_046 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.094

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8RJC|1|K|U|2810
8RJC|1|K|G|2811
8RJC|1|K|A|2812
8RJC|1|K|A|2813
8RJC|1|K|C|2814
8RJC|1|K|A|2815
8RJC|1|K|G|2816

Current chains

Chain K

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19