HL_8RJC_047

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8RJC|1|K|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_047 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.056

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8RJC|1|K|C|2872
8RJC|1|K|U|2873
8RJC|1|K|U|2874
8RJC|1|K|C|2875
8RJC|1|K|G|2876
8RJC|1|K|G|2877

Current chains

Chain K

28S rRNA

Nearby chains

Chain n

60S ribosomal protein L41

Chain p

60S ribosomal protein L37a