HL_8RJC_060
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- UUCAGUACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJC_060 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.1669
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8RJC|1|K|U|4301
8RJC|1|K|U|4302
8RJC|1|K|C|4303
8RJC|1|K|A|4304
8RJC|1|K|G|4305
8RJC|1|K|U|4306
8RJC|1|K|A|4307
8RJC|1|K|C|4308
8RJC|1|K|G|4309
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain Q
- Ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: