HL_8RJC_077

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CGUCUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJC_077 not in the Motif Atlas

Homologous match to HL_8C3A_073

Geometric discrepancy: 0.0956

The information below is about HL_8C3A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8RJC|1|u|C|36
8RJC|1|u|G|37
8RJC|1|u|U|38
8RJC|1|u|C|39
8RJC|1|u|U|40
8RJC|1|u|G|41

Current chains

Chain u

5S rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain J

60S ribosomal protein L11

Chain K

Large subunit ribosomal RNA; LSU rRNA