HL_8RJC_079
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJC_079 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.1878
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8RJC|1|v|C|47
8RJC|1|v|A|48
8RJC|1|v|G|49
8RJC|1|v|C|50
8RJC|1|v|U|51
8RJC|1|v|A|52
8RJC|1|v|G|53
8RJC|1|v|C|54
8RJC|1|v|U|55
8RJC|1|v|G|56
Current chains
- Chain v
- 5.8S rRNA
Nearby chains
- Chain 1
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- Ribosomal_L23eN domain-containing protein
- Chain h
- 60S ribosomal protein L35
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39-like
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