HL_8RJC_080
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8RJC|1|v|C|81, 8RJC|1|v|U|85, 8RJC|1|v|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJC_080 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5708
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8RJC|1|v|G|68
8RJC|1|v|U|69
8RJC|1|v|G|70
8RJC|1|v|A|71
8RJC|1|v|A|72
8RJC|1|v|U|73
8RJC|1|v|U|74
8RJC|1|v|G|75
8RJC|1|v|C|76
8RJC|1|v|A|77
8RJC|1|v|G|78
8RJC|1|v|G|79
8RJC|1|v|A|80
8RJC|1|v|C|81
8RJC|1|v|A|82
8RJC|1|v|C|83
8RJC|1|v|A|84
8RJC|1|v|U|85
8RJC|1|v|U|86
8RJC|1|v|G|87
8RJC|1|v|A|88
8RJC|1|v|U|89
8RJC|1|v|C|90
Current chains
- Chain v
- 5.8S rRNA
Nearby chains
- Chain 1
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain 3
- Protein transport protein Sec61 subunit gamma
- Chain 5
- Translocon-associated protein subunit alpha
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- Ribosomal protein L26
- Chain h
- 60S ribosomal protein L35
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39-like
Coloring options: