HL_8RJD_024

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8RJD|1|K|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_024 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1002

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RJD|1|K|G|1627
8RJD|1|K|C|1628
8RJD|1|K|G|1629
8RJD|1|K|A|1630
8RJD|1|K|A|1631
8RJD|1|K|A|1632
8RJD|1|K|G|1633
8RJD|1|K|A|1634
8RJD|1|K|C|1635

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37