HL_8RJD_053

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8RJD|1|K|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_053 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1273

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8RJD|1|K|G|3757
8RJD|1|K|U|3758
8RJD|1|K|A|3759
8RJD|1|K|A|3760
8RJD|1|K|C|3761
8RJD|1|K|U|3762
8RJD|1|K|A|3763
8RJD|1|K|U|3764
8RJD|1|K|G|3765
8RJD|1|K|A|3766
8RJD|1|K|C|3767

Current chains

Chain K

28S rRNA

Nearby chains

Chain q

Transfer RNA; tRNA