HL_8RJD_057

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8RJD|1|K|A|4214, 8RJD|1|K|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_057 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1249

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8RJD|1|K|U|4210
8RJD|1|K|C|4211
8RJD|1|K|A|4212
8RJD|1|K|A|4213
8RJD|1|K|A|4214
8RJD|1|K|C|4215
8RJD|1|K|G|4216
8RJD|1|K|G|4217
8RJD|1|K|U|4218
8RJD|1|K|A|4219
8RJD|1|K|A|4220
8RJD|1|K|C|4221
8RJD|1|K|G|4222

Current chains

Chain K

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29