HL_8RL2_017

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8RL2|1|L5|A|1630, 8RL2|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_017 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.3059

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RL2|1|L5|G|1627
8RL2|1|L5|C|1628
8RL2|1|L5|G|1629
8RL2|1|L5|A|1630
8RL2|1|L5|A|1631
8RL2|1|L5|A|1632
8RL2|1|L5|G|1633
8RL2|1|L5|A|1634
8RL2|1|L5|C|1635

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CD

GTP-binding protein 4

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37