HL_8RL2_051

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8RL2|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_051 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1773

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8RL2|1|L5|A|4474
8RL2|1|L5|G|4475
8RL2|1|L5|C|4476
8RL2|1|L5|A|4477
8RL2|1|L5|G|4478
8RL2|1|L5|A|4479
8RL2|1|L5|A|4480
8RL2|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CD

GTP-binding protein 4

Chain CH

Ribosome biogenesis protein NSA2 homolog

Chain LH

60S ribosomal protein L9