HL_8RPY_011

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8RPY|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPY_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1279

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8RPY|1|A|A|382
8RPY|1|A|C|383
8RPY|1|A|A|384
8RPY|1|A|C|385
8RPY|1|A|G|386
8RPY|1|A|U|387
8RPY|1|A|G|388
8RPY|1|A|G|389
8RPY|1|A|U|390
8RPY|1|A|A|391
8RPY|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

Large ribosomal subunit protein bL28