HL_8RPY_044
3D structure
- PDB id
- 8RPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8RPY|1|A|A|1780, 8RPY|1|A|U|1781, 8RPY|1|A|U|1782, 8RPY|1|A|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RPY_044 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.1412
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8RPY|1|A|U|1777
8RPY|1|A|U|1778
8RPY|1|A|U|1779
8RPY|1|A|A|1780
8RPY|1|A|U|1781
8RPY|1|A|U|1782
8RPY|1|A|A|1783
8RPY|1|A|A|1784
8RPY|1|A|A|1785
8RPY|1|A|A|1786
8RPY|1|A|A|1787
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain C
- Large ribosomal subunit protein uL2
- Chain z
- Apidaecins type 137
Coloring options: