HL_8RPZ_005

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1823

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8RPZ|1|A|U|158
8RPZ|1|A|G|159
8RPZ|1|A|A|160
8RPZ|1|A|A|161
8RPZ|1|A|U|162
8RPZ|1|A|C|163
8RPZ|1|A|C|164
8RPZ|1|A|A|165
8RPZ|1|A|U|166
8RPZ|1|A|A|167
8RPZ|1|A|G|168

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

Large ribosomal subunit protein bL28