HL_8RPZ_047

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

8RPZ|1|A|A|1913, 8RPZ|1|A|C|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_047 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.5845

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8RPZ|1|A|G|1910
8RPZ|1|A|U|1911
8RPZ|1|A|A|1912
8RPZ|1|A|A|1913
8RPZ|1|A|C|1914
8RPZ|1|A|U|1915
8RPZ|1|A|A|1916
8RPZ|1|A|U|1917
8RPZ|1|A|A|1918
8RPZ|1|A|A|1919
8RPZ|1|A|C|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains