HL_8RRI_022

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CACAUG

Length

6 nucleotides

Bulged bases

8RRI|1|A|A|2558, 8RRI|1|A|U|2559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RRI_022 not in the Motif Atlas

Geometric match to HL_4KJI_001

Geometric discrepancy: 0.3823

The information below is about HL_4KJI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97696.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

8RRI|1|A|C|2555
8RRI|1|A|A|2556
8RRI|1|A|C|2557
8RRI|1|A|A|2558
8RRI|1|A|U|2559
8RRI|1|A|G|2560

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial