HL_8RW1_023

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

8RW1|1|2|U|832

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RW1_023 not in the Motif Atlas

Geometric match to HL_4V88_205

Geometric discrepancy: 0.3357

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8RW1|1|2|A|828
8RW1|1|2|U|829
8RW1|1|2|U|830
8RW1|1|2|U|831
8RW1|1|2|U|832
8RW1|1|2|G|833
8RW1|1|2|U|834
8RW1|1|2|U|835
8RW1|1|2|G|836
8RW1|1|2|G|837
8RW1|1|2|U|838
8RW1|1|2|U|839
8RW1|1|2|U|840
8RW1|1|2|C|841
8RW1|1|2|U|842

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

KLLA0A10483p