HL_8RXH_007

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAAAG

Length

5 nucleotides

Bulged bases

8RXH|1|L1|A|247, 8RXH|1|L1|A|248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_007 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.0445

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8RXH|1|L1|C|245
8RXH|1|L1|A|246
8RXH|1|L1|A|247
8RXH|1|L1|A|248
8RXH|1|L1|G|249

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LC

Putative ribosomal protein L1a

Chain LW

Putative 60S ribosomal protein L26