HL_8RXH_008
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GUGUUAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8RXH|1|L1|G|255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_008 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1231
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8RXH|1|L1|G|253
8RXH|1|L1|U|254
8RXH|1|L1|G|255
8RXH|1|L1|U|256
8RXH|1|L1|U|257
8RXH|1|L1|A|258
8RXH|1|L1|G|259
8RXH|1|L1|C|260
8RXH|1|L1|C|261
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Putative ribosomal protein L1a
- Chain LW
- Putative 60S ribosomal protein L26
Coloring options: