HL_8RXH_018

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAAAAUG

Length

7 nucleotides

Bulged bases

8RXH|1|L1|A|762, 8RXH|1|L1|U|763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_018 not in the Motif Atlas

Geometric match to HL_4WF9_007

Geometric discrepancy: 0.2022

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8RXH|1|L1|C|758
8RXH|1|L1|A|759
8RXH|1|L1|A|760
8RXH|1|L1|A|761
8RXH|1|L1|A|762
8RXH|1|L1|U|763
8RXH|1|L1|G|764

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Putative 60S ribosomal protein L13

Chain LL

Putative 60S ribosomal protein L27A/L29

Chain Lb

60S ribosomal protein L29