HL_8RXH_024
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- C(OMC)(PSU)CAG
- Length
- 6 nucleotides
- Bulged bases
- 8RXH|1|L1|C|1012, 8RXH|1|L1|A|1013
- QA status
- Modified nucleotides: OMC, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_024 not in the Motif Atlas
- Homologous match to HL_8C3A_022
- Geometric discrepancy: 0.2403
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8RXH|1|L1|C|1009
8RXH|1|L1|OMC|1010
8RXH|1|L1|PSU|1011
8RXH|1|L1|C|1012
8RXH|1|L1|A|1013
8RXH|1|L1|G|1014
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain Lb
- 60S ribosomal protein L29
- Chain Lp
- Putative 60S ribosomal protein L44
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