HL_8RXH_025

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_025 not in the Motif Atlas

Geometric match to HL_6JXM_002

Geometric discrepancy: 0.3649

The information below is about HL_6JXM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RXH|1|L1|G|1064
8RXH|1|L1|U|1084
8RXH|1|L1|C|1085
8RXH|1|L1|G|1086
8RXH|1|L1|A|1087
8RXH|1|L1|C|1088

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LN

Putative 60S ribosomal protein L10

Chain LO

Putative 60S ribosomal protein L5