HL_8RXH_032
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GGAGAUAUACUCAACAUGCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8RXH|1|L1|U|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_032 not in the Motif Atlas
- Geometric match to HL_8C3A_054
- Geometric discrepancy: 0.1232
- The information below is about HL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8RXH|1|L1|G|1553
8RXH|1|L1|G|1554
8RXH|1|L1|A|1555
8RXH|1|L1|G|1556
8RXH|1|L1|A|1557
8RXH|1|L1|U|1558
8RXH|1|L1|A|1559
8RXH|1|L1|U|1560
8RXH|1|L1|A|1561
8RXH|1|L1|C|1562
8RXH|1|L1|U|1563
8RXH|1|L1|C|1564
8RXH|1|L1|A|1565
8RXH|1|L1|A|1566
8RXH|1|L1|C|1567
8RXH|1|L1|A|1568
8RXH|1|L1|U|1569
8RXH|1|L1|G|1570
8RXH|1|L1|C|1571
8RXH|1|L1|A|1572
8RXH|1|L1|A|1573
8RXH|1|L1|C|1574
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L5
- SR4_chain_5
- Chain LQ
- Putative 60S ribosomal protein L19
- Chain LT
- Putative 60S ribosomal protein L17
- Chain Le
- Putative 60S ribosomal subunit protein L31
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