HL_8RXH_046

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGGAACGGAC

Length

10 nucleotides

Bulged bases

8RXH|1|L2|A|618, 8RXH|1|L2|A|619, 8RXH|1|L2|C|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_046 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0635

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8RXH|1|L2|G|615
8RXH|1|L2|G|616
8RXH|1|L2|G|617
8RXH|1|L2|A|618
8RXH|1|L2|A|619
8RXH|1|L2|C|620
8RXH|1|L2|G|621
8RXH|1|L2|G|622
8RXH|1|L2|A|623
8RXH|1|L2|C|624

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LB

Putative ribosomal protein L3

Chain Lf

60S ribosomal protein L32