HL_8RXH_058

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGUUCA(PSU)AG

Length

9 nucleotides

Bulged bases

8RXH|1|L2|A|1283

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_058 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.3942

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RXH|1|L2|C|1278
8RXH|1|L2|G|1279
8RXH|1|L2|U|1280
8RXH|1|L2|U|1281
8RXH|1|L2|C|1282
8RXH|1|L2|A|1283
8RXH|1|L2|PSU|1284
8RXH|1|L2|A|1285
8RXH|1|L2|G|1286

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain LN

Putative 60S ribosomal protein L10

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain S2

Transfer RNA; tRNA