HL_8RXH_059

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGCAGAAG

Length

8 nucleotides

Bulged bases

8RXH|1|L2|G|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_059 not in the Motif Atlas

Geometric match to HL_5TBW_062

Geometric discrepancy: 0.1547

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8RXH|1|L2|C|1335
8RXH|1|L2|G|1336
8RXH|1|L2|C|1337
8RXH|1|L2|A|1338
8RXH|1|L2|G|1339
8RXH|1|L2|A|1340
8RXH|1|L2|A|1341
8RXH|1|L2|G|1342

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain L4

Large subunit ribosomal RNA; LSU rRNA

Chain LE

Putative 60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40