HL_8RXH_064

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAUGG

Length

5 nucleotides

Bulged bases

8RXH|1|L2|A|1510, 8RXH|1|L2|U|1511, 8RXH|1|L2|G|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_064 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2439

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8RXH|1|L2|C|1509
8RXH|1|L2|A|1510
8RXH|1|L2|U|1511
8RXH|1|L2|G|1512
8RXH|1|L2|G|1513

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain L5

SR4_chain_5

Chain LB

Putative ribosomal protein L3

Chain Le

Putative 60S ribosomal subunit protein L31