HL_8RXH_096

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CACCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_096 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.0933

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8RXH|1|S1|C|618
8RXH|1|S1|A|619
8RXH|1|S1|C|620
8RXH|1|S1|C|621
8RXH|1|S1|C|622
8RXH|1|S1|G|623

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain S5

mRNA_chain_S5

Chain SP

Putative 40S ribosomal protein S23