HL_8RXH_098

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UGUCAUGCA

Length

9 nucleotides

Bulged bases

8RXH|1|S1|C|816, 8RXH|1|S1|U|818, 8RXH|1|S1|C|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_098 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2164

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8RXH|1|S1|U|813
8RXH|1|S1|G|814
8RXH|1|S1|U|815
8RXH|1|S1|C|816
8RXH|1|S1|A|817
8RXH|1|S1|U|818
8RXH|1|S1|G|819
8RXH|1|S1|C|820
8RXH|1|S1|A|821

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SG

40S ribosomal protein S6

Chain Sh

Putative RNA binding protein