HL_8RXH_104
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GA(PSU)UAGAAACC
- Length
- 11 nucleotides
- Bulged bases
- 8RXH|1|S1|A|1251
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_104 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2576
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8RXH|1|S1|G|1244
8RXH|1|S1|A|1245
8RXH|1|S1|PSU|1246
8RXH|1|S1|U|1247
8RXH|1|S1|A|1248
8RXH|1|S1|G|1249
8RXH|1|S1|A|1250
8RXH|1|S1|A|1251
8RXH|1|S1|A|1252
8RXH|1|S1|C|1253
8RXH|1|S1|C|1254
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain S3
- Transfer RNA; tRNA
- Chain S4
- Transfer RNA; tRNA
- Chain S5
- mRNA_chain_S5
- Chain SO
- 40S ribosomal protein S14
- Chain Sb
- 40S ribosomal protein S26
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