HL_8RXH_106

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_106 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0854

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8RXH|1|S1|C|1434
8RXH|1|S1|G|1435
8RXH|1|S1|A|1436
8RXH|1|S1|A|1437
8RXH|1|S1|A|1438
8RXH|1|S1|G|1439

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SF

40S ribosomal protein S2

Chain SJ

Putative 40S ribosomal protein S15A

Chain Sb

40S ribosomal protein S26