HL_8RXH_107
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UCGCAA(OMG)A
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_107 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.2597
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8RXH|1|S1|U|1472
8RXH|1|S1|C|1473
8RXH|1|S1|G|1474
8RXH|1|S1|C|1475
8RXH|1|S1|A|1476
8RXH|1|S1|A|1477
8RXH|1|S1|OMG|1478
8RXH|1|S1|A|1479
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain Lo
- 60S ribosomal protein L37a
Coloring options: