HL_8RXH_108
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GAC(B8N)(5MC)AACAC
- Length
- 10 nucleotides
- Bulged bases
- 8RXH|1|S1|A|1545, 8RXH|1|S1|A|1548
- QA status
- Modified nucleotides: B8N, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_108 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.1041
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8RXH|1|S1|G|1540
8RXH|1|S1|A|1541
8RXH|1|S1|C|1542
8RXH|1|S1|B8N|1543
8RXH|1|S1|5MC|1544
8RXH|1|S1|A|1545
8RXH|1|S1|A|1546
8RXH|1|S1|C|1547
8RXH|1|S1|A|1548
8RXH|1|S1|C|1549
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain S2
- Transfer RNA; tRNA
- Chain S3
- Transfer RNA; tRNA
- Chain SL
- Putative 40S ribosomal protein S16
- Chain SM
- Putative ribosomal protein S20
- Chain SS
- Putative ribosomal protein S29
- Chain Sa
- 40S ribosomal protein S25
- Chain Sf
- Ubiquitin-60S ribosomal protein L40
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