HL_8RXH_109

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

AUUGAGUGUU

Length

10 nucleotides

Bulged bases

8RXH|1|S1|G|1595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_109 not in the Motif Atlas

Geometric match to HL_3CUL_003

Geometric discrepancy: 0.2614

The information below is about HL_3CUL_003

Detailed Annotation

T-loop related

Broad Annotation

T-loop related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8RXH|1|S1|A|1590
8RXH|1|S1|U|1591
8RXH|1|S1|U|1592
8RXH|1|S1|G|1593
8RXH|1|S1|A|1594
8RXH|1|S1|G|1595
8RXH|1|S1|U|1596
8RXH|1|S1|G|1597
8RXH|1|S1|U|1598
8RXH|1|S1|U|1599

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SS

Putative ribosomal protein S29

Chain SW

Putative 40S ribosomal protein S15

Chain Sf

Ubiquitin-60S ribosomal protein L40