HL_8RXH_111

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

G(OMU)UGAUUC

Length

8 nucleotides

Bulged bases

8RXH|1|S1|U|1666

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_111 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1422

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8RXH|1|S1|G|1661
8RXH|1|S1|OMU|1662
8RXH|1|S1|U|1663
8RXH|1|S1|G|1664
8RXH|1|S1|A|1665
8RXH|1|S1|U|1666
8RXH|1|S1|U|1667
8RXH|1|S1|C|1668

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SV

Putative 40S ribosomal protein S17