HL_8RXH_115
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AUUGCAAUUA(OMU)U
- Length
- 12 nucleotides
- Bulged bases
- 8RXH|1|S1|A|1978
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_115 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.1592
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8RXH|1|S1|A|1969
8RXH|1|S1|U|1970
8RXH|1|S1|U|1971
8RXH|1|S1|G|1972
8RXH|1|S1|C|1973
8RXH|1|S1|A|1974
8RXH|1|S1|A|1975
8RXH|1|S1|U|1976
8RXH|1|S1|U|1977
8RXH|1|S1|A|1978
8RXH|1|S1|OMU|1979
8RXH|1|S1|U|1980
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain SR
- Putative 40S ribosomal protein S18
- Chain SS
- Putative ribosomal protein S29
- Chain SW
- Putative 40S ribosomal protein S15
- Chain SX
- 40S ribosomal protein S19-like protein
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