HL_8RXH_122

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAGCCUGGAG

Length

10 nucleotides

Bulged bases

8RXH|1|S3|C|17, 8RXH|1|S3|U|18, 8RXH|1|S3|G|19, 8RXH|1|S3|G|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RXH_122 not in the Motif Atlas

Homologous match to HL_6UFM_001

Geometric discrepancy: 0.1951

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8RXH|1|S3|C|13
8RXH|1|S3|A|14
8RXH|1|S3|G|15
8RXH|1|S3|C|16
8RXH|1|S3|C|17
8RXH|1|S3|U|18
8RXH|1|S3|G|19
8RXH|1|S3|G|20
8RXH|1|S3|A|21
8RXH|1|S3|G|22

Current chains

Chain S3

P-site_tRNA_chain_S3

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein L11