HL_8RXH_123
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RXH_123 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0858
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8RXH|1|S3|G|31
8RXH|1|S3|C|32
8RXH|1|S3|U|33
8RXH|1|S3|C|34
8RXH|1|S3|A|35
8RXH|1|S3|U|36
8RXH|1|S3|A|37
8RXH|1|S3|A|38
8RXH|1|S3|C|39
Current chains
- Chain S3
- P-site_tRNA_chain_S3
Nearby chains
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain S4
- Transfer RNA; tRNA
- Chain S5
- mRNA_chain_S5
- Chain SL
- Putative 40S ribosomal protein S16
- Chain Sa
- 40S ribosomal protein S25
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